SNP Profiles of COCA 3348 /52 [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCGGTTAGACCGAATTAAGGAACC
1._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
2._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
3._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
4._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
5._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
6._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
7._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
8._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
9._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
10._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
11._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
12._GC-08-205-5-19
CTCCCCGGTTAGAACCAATTAGGGAACC
13._GC-08-205-5-19
CTCCCCGGTTAGAACCAATTAGGGAACC
14._GC-08-205-5-19
CTCCCCGGTTAGAACCAATTAGGGAACC
15._GC-08-206-5-20
CTCCCCGGTTAGAACCAATTAGGGAACC
16._GC-08-206-5-20
CTCCCCGGTTAGAACCAATTAGGGAACC
17._GC-08-206-5-20
CTCCCCGGTTAGAACCAATTAGGGAACC
18._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
19._GC-08-206-5-20
CTCCCCGGTTAGAACCAATTAGGGAACC
20._GC-08-206-5-20
CTCCCCGGTTAGAACCAATTAGGGAACC
21._GC-01-081-4-17
CTCCCCGGTTAGAACCAATTAGGGAACC
22._GC-01-081-4-17
CTCCCCGGTTAGAACCAATTAGGGAACC
23._GC-01-081-4-17
CTCCCCGGTTAGAACCAATTAGGGAACC
24._GC-01-081-4-17
CTCCCCGGTTAGAACCAATTAGGGAACC
25._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
26._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
27._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
28._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
29._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
30._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
31._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
32._GC-08-005-1-05
CTCCCCGGTTAGAACCAATTAGGGAACC
33._GC-01-081-4-17
CTCC_GGTTAGAACCAATTAGGGAACC
34._GC-08-005-1-05
CTCCCCGG_AGAACCAATTAGGGAACC
35._GC-08-005-1-05
CTCCCCGGCTAGAACCAATTAGGGAACC
36._RUQ_141
__AA_____AG_AG___
37._MITC-000338
AACCCCCCAAAGACCGAAAAAAGGAAGG
 1516171819202122232425262728
_Input profile
AGCCCTGTCGACCCCCTTGGGGTTCCCC
1._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
2._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
3._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
4._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
5._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
6._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
7._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
8._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
9._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
10._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
11._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
12._GC-08-205-5-19
GGCCCTGTCGCCCTCTCCGGGGGTACCC
13._GC-08-205-5-19
GGCCCTGTCGCCCTCTCCGGGGGTACCC
14._GC-08-205-5-19
GGCCCTGTCGCCCTCTCCGGGGGTACCC
15._GC-08-206-5-20
GGCCCTGTCGCCCTCTCCGGGGGTACCC
16._GC-08-206-5-20
GGCCCTGTCGCCCTCTCCGGGGGTACCC
17._GC-08-206-5-20
GGCCCTGTCGCCCTCTCCGGGGGTACCC
18._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
19._GC-08-206-5-20
GGCCCTGTCGCCCTCTCCGGGGGTACCC
20._GC-08-206-5-20
GGCCCTGTCGCCCTCTCCGGGGGTACCC
21._GC-01-081-4-17
GGCCCTGTCGCCCTCTCCGGGGGTACCC
22._GC-01-081-4-17
GGCCCTGTCGCCCTCTCCGGGGGTACCC
23._GC-01-081-4-17
GGCCCTGTCGCCCTCTCCGGGGGTACCC
24._GC-01-081-4-17
GGCCCTGTCGCCCTCTCCGGGGGTACCC
25._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
26._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
27._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
28._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
29._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
30._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
31._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
32._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTAC_
33._GC-01-081-4-17
GGCCCTGTCGCCCTCTCCGGGGGTACCC
34._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
35._GC-08-005-1-05
GGCCCTGTCGCCCTCTCCGGGGGTACCC
36._RUQ_141
_AC__GGACCC_CTGGAG_CCCC
37._MITC-000338
_CC_ACCGACGGGG_CCGGAACCGG
 2930313233343536373839404142
_Input profile
CCCCAACCCCGTGGATGGTTCCTTGGAG
1._GC-08-005-1-05
CGCCAGCTCTGGGG_GGTTCTCCCGAA
2._GC-08-005-1-05
_CCAGCTCTGGGGTTGGTTCTCCCGAA
3._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
4._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
5._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
6._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
7._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
8._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
9._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
10._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
11._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
12._GC-08-205-5-19
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
13._GC-08-205-5-19
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
14._GC-08-205-5-19
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
15._GC-08-206-5-20
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
16._GC-08-206-5-20
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
17._GC-08-206-5-20
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
18._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
19._GC-08-206-5-20
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
20._GC-08-206-5-20
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
21._GC-01-081-4-17
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
22._GC-01-081-4-17
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
23._GC-01-081-4-17
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
24._GC-01-081-4-17
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
25._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
26._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
27._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
28._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
29._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
30._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
31._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
32._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
33._GC-01-081-4-17
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
34._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
35._GC-08-005-1-05
CGCCAGCTCTGGGGTTGGTTCTCCCGAA
36._RUQ_141
__AACC____GT___CC_
37._MITC-000338
_GGAA_GGACGG_CCAAGGAACCAG

Input profile: COCA_3348_/52_[CHA] RUQ_141

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._COCA_3348_/52_[CHA] GC-08-005-1-05

73.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

2._COCA_3348_/52_[CHA] GC-08-005-1-05

73.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

4._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

7._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 17
Notes: 17
 Mars, 2018

8._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

9._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 21
Notes: 21
 Mars, 2018

11._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 22
Notes: 22
 Mars, 2018

12._COCA_3348_/52_[CHA] GC-08-205-5-19

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._COCA_3348_/52_[CHA] GC-08-205-5-19

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._COCA_3348_/52_[CHA] GC-08-205-5-19

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._COCA_3348_/52_[CHA] GC-08-206-5-20

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._COCA_3348_/52_[CHA] GC-08-206-5-20

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._COCA_3348_/52_[CHA] GC-08-206-5-20

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._COCA_3348_/52_[CHA] GC-08-206-5-20

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._COCA_3348_/52_[CHA] GC-08-206-5-20

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._COCA_3348_/52_[CHA] GC-01-081-4-17

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._COCA_3348_/52_[CHA] GC-01-081-4-17

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

23._COCA_3348_/52_[CHA] GC-01-081-4-17

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._COCA_3348_/52_[CHA] GC-01-081-4-17

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

25._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

26._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

28._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

29._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

30._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

31._COCA_3348_/52_[CHA] GC-08-005-1-05

72.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

32._COCA_3348_/52_[CHA] GC-08-005-1-05

72 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

33._COCA_3348_/52_[CHA] GC-01-081-4-17

72 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

34._COCA_3348_/52_[CHA] GC-08-005-1-05

72 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

35._COCA_3348_/52_[CHA] GC-08-005-1-05

71.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._COCA_3348_/52_[CHA] RUQ_141

65.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

37._COCA_3348_/52_[CHA] MITC-000338

47.2 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484